File name | Column content |
chem_xref.tsv |
- The identifier of a chemical compound in an external resource [XREF]
- The corresponding identifier in the MNXref namespace [MNX_ID]
- The description given by the external resource [STRING]
MNXref 4.0 release notes:
- The third column (evidence tag for the mapping) was suppressed
- The descriptions were completed
- Deprecated identifiers were moved into they own table below
|
chem_prop.tsv |
- The identifier of the chemical compound in the MNXref namespace [MNX_ID]
- The common name of the compound [STRING]
- The original best resource from where this compound comes from [REFERENCE]
- The formula of the compound [STRING]
- The charge of the compound [INTEGER]
- The mass of the compound [REAL]
- The standard InChI of the compound [STRING]
- The standard InChIKey of the compound [STRING]
- The SMILES of the compound [STRING]
MNXref 4.0 release notes:
- !!! The columns have been reordered !!!
- Formulas that ends with * are incomplete - there are no R-groups in formulas anymore
|
chem_depr.tsv |
- The deprecated identifier [MNX_ID]
- The replacement identifier [MNX_ID]
- This happened in this MNXref version [STRING]
MNXref 4.0 release notes:
- This is a new dataset
- One-to-one, many-to-one (merge) and one-to-many (split) mappings are possible
|
comp_xref.tsv |
- The identifier of a sub-cellular compartment in an external resource [XREF]
- The corresponding identifier in the MNXref namespace [MNX_ID]
- The description given by the external resource [STRING]
|
comp_prop.tsv |
- The identifier of the sub-cellular compartment in the namespace [MNX_ID]
- The common name of that compartment [STRING]
- The original best resource from where this compartment comes from [REFERENCE]
MNXref 4.0 release notes:
- The content of this file was drastically simplified/sanitized
|
comp_depr.tsv |
- The deprecated identifier [MNX_ID]
- The replacement identifier [MNX_ID]
- This happened in this MNXref version [STRING]
MNXref 4.0 release notes:
- This is currently an empty dataset (placeholder) that will be filled in future release
|
reac_xref.tsv |
- The identifier of a biochemical reaction in an external resource [XREF]
- The corresponding identifier in the MNXref namespace [MNX_ID]
- The biochemical reaction given by the external resource [STRING]
|
reac_prop.tsv |
- The identifier of the reaction in the MNXref namespace [MNX_ID]
- Equation of the reaction in the MNXref namespace (compartmentalized and undirected) [EQUA]
- The original best resource from where this reaction comes from [REFERENCE]
- The EC(s) associated to this reaction [STRING]
- Is the equation balanced with respect to elemental composition and charge [BOOLEAN]
- Is this a transport reaction[BOOLEAN]
MNXref 4.0 release notes:
- !!! The columns were reordered !!!
- The column "human readable equation" was suppressed
|
reac_depr.tsv |
- The deprecated identifier [MNX_ID]
- The replacement identifier [MNX_ID]
- This happened in this MNXref version [STRING]
MNXref 4.0 release notes:
- This is a new dataset
- One-to-one, many-to-one (merge) and one-to-many (split) mappings are possible
|